Oct 14, 2018
MACSNPdb is an open-access SNP database comprising ~80.88 million high-quality non-redundant SNPs called from 20 macaques that may assist researchers to investigate interspecies genetic divergence between macaques. MACSNPdb allows users to browse and retrieve individual, sepcific and non-redundant SNPs. In particular, users can retrieve non-synonymous SNPs that may have deleterious effects on protein structure or function within macaque orthologs of human disease and drug-target genes. MACSNPdb also integrates gene functional annotation information including GO term, KEGG pathway, Pfam and InterPro domains.
This work was supported by the National Natural Science Foundation of China (31501871 and 31530068), the Start-up Fund of Chengdu University (2081916062), the Key Research Fund on Sciences and Technologies for Joint Academic Institute and Local Enterprises of Sichuan (2018JZ0008), and partly funded by the Fundamental Research Funds for the Central Universities (2012017yjsy153).
Database developer Lianming Du (firstname.lastname@example.org) and Zhenxin Fan (email@example.com)
Oct 14, 2018
Jul 16, 2018
May 8, 2018
|Individual SNPs||215 932 420|
|Non-redundant SNPs||80 879 499|
|Group-specific SNPs||5 079 706|
|Species-specific SNPs||7 252 490|
|SNPs in CDS||522 465|
|Nonsynonymous SNPs||220 098|